Canonical reference
Ioannis Tsiokos (2026), Six Birds: Foundations of Emergence Calculus
DOI: 10.5281/zenodo.18365949
Copy Citation
@article{tsiokos2026sixbirds,
title={Six Birds: Foundations of Emergence Calculus},
author={Tsiokos, Ioannis},
journal={Automorph},
year={2026},
doi={10.5281/zenodo.18365949}
} Purpose of this page
This page provides a terminology crosswalk for the Six Birds primitive vocabulary P1–P6. Its goal is to help readers:
Found a paper discussing "Protocol Holonomy" or "Operator Rewrites"? Use this index to map those field-specific terms to the unifying Six Birds (P1–P6) framework.
- Recognize the same underlying primitives when they appear under different names across fields.
- Map alternative terminology back to the canonical P-numbered definitions.
- Cite the foundational source consistently when using these primitives in new work.
How to use this page
- If you see (or use) a six-part framework for emergence, objecthood, closure, coarse-graining, protocol/context, invariants, and auditing/monotones, compare it to the definitions below.
- When writing, prefer the stable handles P1–P6 and optionally list your local discipline's alias in parentheses.
Framework map (visual placeholder)
This diagram is a lightweight placeholder for the full six-node dependency map and is intended to increase visual anchoring and scanability.
Canonical primitive vocabulary (P1–P6)
P1 — Operator rewrite
Canonical meaning: Replace the substrate/evolution operator (e.g., Markov kernel P) by a new
operator P' (or a family P^(m)), thereby changing the induced dynamics and any induced completion maps.
Fingerprint:
- A change to the operator itself (not merely re-describing it).
- Affects the induced endomap(s) (e.g.,
μ → μP^τ), and any derivedE_(τ,f). - Used when macro-compatibility fails or when closure requires a modified law.
P2 — Gating / constraints
Canonical meaning: Restrict feasibility by deleting transitions or restricting support (e.g., setting selected
P_ij = 0 and renormalizing), equivalently restricting to a subgraph or feasible region.
Fingerprint:
- Changes what is allowed (support/feasible set), not how allowed transitions are weighted.
- Primarily structural: removes edges, forbids moves, imposes hard constraints.
P3 — Autonomous protocol holonomy
Canonical meaning: Model protocol/context as an internal state variable (phase) in an autonomous lifted
system Z = X × Φ. Route mismatch/holonomy is a diagnostic of noncommuting closure/evolution routes; by
itself it is not a directionality certificate.
Fingerprint:
- Explicit lift to include protocol/phase/context in state.
- Distinguishes autonomous protocol (internal phase kernel
S) from external scheduling. - "Holonomy" = route mismatch / noncommutativity in admissible routes.
P4 — Sectors / invariants (staging)
Canonical meaning: A conserved sector label / block decomposition (e.g., the support decomposes into disconnected components; evolution preserves a sector coordinate).
Fingerprint:
- Invariant label, ergodic-component split, block structure.
- Evolution cannot cross sectors; sector index is conserved.
P5 — Packaging
Canonical meaning: An idempotent endomap e whose fixed points Fix(e) are the packaged objects of the
theory. Packaging is an endomap notion (not necessarily an order-closure).
Fingerprint:
- Idempotence (
e ∘ e = e). - "Objects" are fixed points of completion.
- Separates endomap-idempotence from order-theoretic closure when needed.
P6 — Accounting / audit
Canonical meaning: A monotone certificate / functional that is preserved (or contracted) under coarse maps or packaging. Canonical audits include information/feasibility orders, path-space KL asymmetry (arrow-of-time) with data processing, and cycle-affinity (graph 1-form) audits.
Fingerprint:
- Produces witnesses/monotones (often contractive under coarse-graining).
- Includes path reversal asymmetry (path-space KL) and/or affinity/cycle integrals.
- Used to prevent false inferences from incomplete descriptions.
Alias index by primitive
P1 — Operator rewrite
General / mathematics
- Operator rewrite; operator replacement; rule rewrite; law rewrite.
- Dynamics rewrite; generator replacement; kernel substitution.
- Model rewrite; law modification; substrate rewrite.
- Effective operator insertion; corrected propagator; induced-law correction.
- Renormalized dynamics; effective dynamics; closure-restoring rewrite.
- Operator edit; operator refactor; operator retuning; operator family indexing.
Physics / applied math
- Effective theory term; backreaction term; correction term.
- Modified evolution law; renormalized generator; effective field term.
- "Rewrite of the dynamics" / "rewrite of the update rule".
ML / computation
- Model update; mechanism swap; update-rule change.
- Transition-model replacement; dynamics model revision.
- "Swap the simulator"; "change the transition function".
P2 — Gating / constraints
General / mathematics
- Constraints; feasibility restriction; admissibility restriction.
- Support restriction; allowed-set restriction; state-space restriction.
- Transition pruning; edge deletion; subgraph restriction.
- Forbidden transitions; barrier insertion; viability restriction.
- Constraint operator; restriction operator; feasibility filter; masking.
Physics / chemistry
- Selection rules; forbidden processes; barrier constraints.
- Accessible-region restriction; constrained manifold.
ML / computation
- Hard constraints; constraint mask; pruning; sparsity mask.
- Access control; rule-based filtering; feasibility gating.
P3 — Autonomous protocol holonomy
General / mathematics
- Protocol holonomy; route mismatch; reduction holonomy.
- Noncommuting routes; order-of-operations effect.
- Path dependence of reduction; non-Abelian route dependence (informal).
- Lifted model; augmented-state model; extended-state dynamics.
- Internal context variable; internal phase variable; mode variable.
Stochastic processes / dynamical systems
- Phase-indexed kernel family; mode-indexed kernels.
- Autonomous switching dynamics; hidden-mode Markov model (structural resemblance).
- Stroboscopic illusion (when external schedule is incorrectly assumed).
Physics
- Geometric phase effect (metaphor); protocol geometry.
- Internal clock audit (when used with P6).
ML / computation
- Context conditioning; latent context channel.
- Mode switching; regime-conditioned dynamics; hidden protocol state.
P4 — Sectors / invariants (staging)
General / mathematics
- Sectors; invariant sectors; conserved label; sector coordinate.
- Block decomposition; block diagonal structure; invariant partition.
- Disconnected components; communicating classes; ergodic components.
- Invariant subspaces; invariant classes; stratification by invariants.
Physics
- Superselection sectors; symmetry sectors; charge sectors.
- Topological sectors; gauge sectors (when applicable).
ML / computation
- Regime partition; domain partition; latent class partition.
- Compartmentalization; immutable labels.
P5 — Packaging
General / mathematics
- Packaging map; completion map; semantic completion.
- Idempotent endomap; idempotent map; projector/retract (informal).
- Canonicalization map; normal-form map; saturation map.
- Quotienting (informal); reflection/reflector (category-flavored).
- "Objectification" operator; stabilization map; fixed-point extractor.
Coarse-graining / multiscale modeling
- Coarse-graining completion; lumping completion.
- Renormalization step (informal); macro-consistent completion.
- Prototype completion (when implemented via prototypes).
ML / computation
- Encoder-decoder closure; idempotent compressor.
- Prototype assignment + reconstruction.
- Representation closure; abstraction closure.
- "One-step autoencoder closure" (structural resemblance).
Quantum foundations
- Dephasing (as an idempotent completion); diagonalization in a record basis.
- Decoherence-as-packaging; record stabilization map.
- Collapse-as-packaging (interpretive mapping).
P6 — Accounting / audit
General / mathematics
- Audit functional; witness functional; monotone functional.
- Certificate; invariant diagnostic; consistency check.
- Feasibility/order monotone; information monotone.
- Contraction witness (under coarse maps).
Stochastic thermodynamics / information theory
- Path-space KL; path reversal asymmetry; arrow-of-time measure.
- Entropy production (finite horizon or rate).
- Detailed-balance test (null regime).
- Affinity; cycle affinity; cycle integral witness.
- Log-ratio 1-form; circulation; non-exactness witness.
- Current/flux witness; loop integral diagnostic.
- Data processing inequality (DPI) sanity check.
ML / computation
- Loss/score used as monotone under abstraction.
- Validation functional; irreversibility witness; directionality gauge.
Umbrella names for the overall framework
Academic / neutral
- Six-primitive framework; six-operator framework; six-mechanism framework.
- Hexadic / hexad framework; sextet of primitives; sixfold operator basis.
- Sixfold emergence calculus; hexadic emergence calculus.
- Sixfold theory-formation calculus; sixfold closure mechanics.
- Sixfold closure-and-audit framework; sixfold closure-extension-audit schema.
- Sixfold "lens-completion-audit" framework.
- Sixfold framework for stable object formation and theory extension.
- Sixfold fixed-point objecthood framework.
Structural / geometric metaphors
- Hexagon model; hexagonal framework; six-node operator graph.
- Six-spoke wheel; six-axis schema; six-pillar model.
- Six-stage operator pipeline; six-module emergence stack.
Computation / ML-flavored
- Six primitive operations for abstraction.
- Six transformations for representation formation.
- Six-module abstraction pipeline.
- Six-operator toolkit for model closure and auditing.
Physics / thermo-flavored
- Sixfold coarse-grained dynamics + irreversibility audit.
- Sixfold drive-constraint-sector-closure-audit schema.
- Sixfold framework for honest irreversibility under coarse observation.
Common six-part relabelings mapped to P1–P6
Below are common six-word bundles that frequently appear in the literature. Each maps directly onto P1–P6:
- Update / Mutate / Rewrite → P1
Prune / Restrict / Constrain → P2
Context / Phase / Protocol → P3
Partition / Sector / Invariant → P4
Close / Complete / Stabilize → P5
Measure / Witness / Audit → P6 - Model patch (P1) — Feasibility filter (P2) — Hidden clock (P3) — Ergodic classes (P4) — Idempotent projection (P5) — Entropy/KL witness (P6)
- Law rewrite (P1) — Barrier insertion (P2) — Noncommuting routes (P3) — Superselection (P4) — Fixed-point completion (P5) — Affinity audit (P6)
Related technical constructs
Lens / interface map (f: Z → X)
Also called:
- Coarse-graining map; observation map; measurement map; readout; interface map; partition map; quotient map (informal); many-to-one map.
Coarse map (Q_f) and lift (U_f)
Also called:
- Pushforward / marginalization (for
Q_f). - Canonical lift / reconstruction / right-inverse (for
U_f). - Encoder/decoder pair (ML analogy); aggregation/disaggregation.
Induced empirical endomap (E_(τ,f)(μ) = U_f(Q_f(μP^τ)))
Also called:
- Empirical completion map; scale-τ packaging operator; coarse-evolve-and-reconstruct map; induced macro-closure; "one-step closure" at timescale τ.
Fixed points (Fix(e))
Also called:
- Stable objects; completed descriptions; semantic fixed points; closed macrostates; self-consistent states; packaged entities.
Idempotence defect (δ_(τ,f)) and retention error (ε_(τ,f))
Also called:
- Saturation defect; closure defect; self-consistency defect; stability error; prototype stability error; reconstruction-consistency error.
Route mismatch / holonomy defect
Also called:
- Noncommutativity defect; order-of-operations mismatch; closure-evolution mismatch; reduction path dependence; holonomy diagnostic.
Arrow-of-time (path reversal asymmetry)
Also called:
- Time-asymmetry measure; irreversibility measure; path-space KL; finite-horizon entropy production; forward-reverse distinguishability.
Data processing for path-space KL
Also called:
- "Coarse-graining cannot create an arrow"; no-false-positives principle; KL contraction under observation; information monotonicity under coarse maps.
Drive audit via log-ratio 1-form / cycle affinities
Also called:
- Thermodynamic force; cycle affinity; circulation; non-gradient component; curl/holonomy (metaphor); detailed-balance obstruction; nonequilibrium witness.
Autonomous protocol lift (Z = X × Φ)
Also called:
- Phase-included model; lifted autonomous protocol; internal-clock model; augmented-state protocol dynamics; hidden-phase model (structural resemblance).
Recommended attribution language
If you use the primitive vocabulary directly
"We use the Six Birds primitive vocabulary P1–P6 as introduced in Six Birds: Foundations of Emergence Calculus (Tsiokos, 2026, DOI: 10.5281/zenodo.18365949)."
If your field uses different terms
"Our '[local term]' corresponds to P# (preferred label: '[P# name]') in the Six Birds vocabulary (Tsiokos, 2026, DOI: 10.5281/zenodo.18365949)."
If you use only part of the framework
"We adopt the Six Birds notions of packaging (P5) and audit/monotones (P6), following Tsiokos (2026, DOI: 10.5281/zenodo.18365949)."
Suggested keywords and search phrases
Whole framework
- Six-operator framework; six-primitive framework; six-mechanism framework.
- Hexadic / hexad emergence calculus; hexagonal emergence framework.
- Sixfold closure-and-audit; fixed-point objecthood framework.
- Sixfold theory formation; sixfold meta-operator vocabulary.
Individual primitives
- Operator rewrite / kernel substitution (P1).
- Gating / feasibility constraints / support restriction (P2).
- Autonomous protocol / internal clock / holonomy / route mismatch (P3).
- Sectors / invariants / ergodic components / superselection (P4).
- Packaging / completion / idempotent endomap / fixed points (P5).
- Audit / monotone / path-space KL / entropy production / affinity (P6).
Related papers in the Six Birds series
- Six Birds: Foundations of Emergence Calculus (2026) — DOI: 10.5281/zenodo.18365949
- To Wake a Stone with Six Birds: A Life is A Theory (2026) — DOI: 10.5281/zenodo.18394536
- To Become a Stone with Six Birds: A Physics is A Theory (2026) — DOI: 10.5281/zenodo.18412131
- To Throw a Stone with Six Birds: On Agents and Agenthood (2026) — DOI: 10.5281/zenodo.18439737
- To Plot a Stone with Six Birds: A Geometry is A Theory (2026) — DOI: 10.5281/zenodo.18494975
- To Notch a Stone with Six Birds: Time as a Theory Artifact of Order, Measure, and Arrow (2026) — DOI: 10.5281/zenodo.18495363
- A Six Birds' Eye View of Dark Energy (2026)
- A Six-Birds' Eye View of Quantum Theory (2026)
Read the research
Six Birds: Foundations of Emergence Calculus
The full technical paper behind this article, with proofs, experiments, and reproducible code.
View paper landing pageThis page is part of the Six Birds Series — a reference companion to the research papers in the emergence calculus program.